Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology

Here, the state of the art of the application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology will be presented. Furthermore, the potentials and limitations of these techniques will be discussed, and it will be indicated why their use in ecological studies has become so important.     

Diospyros species in Thailand: Their distribution, fruit morphology and uses

Diospyros species distributed widely in Thailand were classified into four ecotypes, according to their habitat; constantly humid area, alternately dry and wet area, mountainous cool area and all area. Some of them inhabit near dwelling areas or in the paddy field in the village. The young fruit is covered with dense pubescence in most species. The size, shape, and color of mature fruit greatly vary greatly with the species. In most species, the mature fruit has a soft pulp and hard skin. The fruit of six species has been used for dying. Four species produce edible fruits, with color and flavor favorable for breeding of edibleDiospyros species. The fruit of some species contains some chemicals useful as fish poisoning or of medicines, although the active components have not yet been identified. The edible fruit contained many tannin cells, but the fruit used as fish poisoning and medicines had only a few.     

Effects of sand bar openings on some limnological variables in a hypertrophic tropical coastal lagoon of Brazil

This study describes the spatial and temporal dynamics of several physical, chemical and biological variables in the Grussai lagoon, and their relationship to ephemeral sand bar openings and to a constant in natura waste water input. The spatial variation in pH, dissolved oxygen, electrical conductivity, total alkalinity and nutrients (e.g. soluble reactive silicate, soluble reactive phosphate and ammonium) was associated to the anoxic and nutrient rich groundwater discharge, the development of aquatic macrophytes, the biological activities of phytoplanktonic community and the marine influence. During the period when the sand bar was closed (isolated), the lagoon water was supersaturated with dissolved oxygen and exhibited high values of pH (8–10), total alkalinity (3.000–5.000 μeq l^-1), and chlorophyll a contents (60-300 μg l^-1), and had low values of dissolved nutrients (nearly undetectable). These suggest a biological processes dominance. When the sand bar was opened, there was an enrichment with dissolved inorganic nutrients (e.g. ammonium and soluble reactive phosphorus up to 120 and 5 μM, respectively) and a decrease in pH (below 8), total alkalinity (below 3.000 μeq l^-1) and dissolved oxygen during the initial second to eight days. Subsequently there was a period when the physical and chemical characteristics of seawater prevailed. The lagoon returned chemical to the pre-opening water conditions in a few days (∼ 10–20). This quick return implies highly efficient biological mechanisms. The high levels of chlorophyll a, total nitrogen and phosphorus in the water column indicate a high eutrophication stage in the Grussai lagoon during the sand bar closed periods. This revised version was published online in July 2006 with corrections to the Cover Date.     

Taxonomy of the deep-sea eel genus, Histiobranchus (Synaphobranchidae, Anguilliformes), with notes on the ecology of H. bathybius in the eastern North Atlantic

The eel genus Histiobranchus Gill occurs benthopelagically over the continental rise and abyss of the World Ocean, primarily beneath temperate and subpolar surface waters. Its generic status within the subfamily Synaphobranchinae is confirmed by comparison of the structure and topography of its cephalic sensory system and skeletal features with Synaphobranchus. At least three species of Histiobranchus are recognized: H. bathybius (panoceanic), H. bruuni (Tasman Sea and waters south-east of New Zealand) and H. australis (two geographical forms; South Atlantic and south-western Indian Ocean, and South Indo-West Pacific Oceans). Collections totalling 319 specimens of H. bathybius from the eastern North Atlantic (1790–5440 m depth) yielded a size range of 99–1370 mm total length ( L _T), with no apparent sexual dimorphism. Length–frequency distributions indicate a mode of juvenile fish at around 100–200 mm L _T and a further two around 600–700 and 1300–1400 mm L _T among adults. Generally smaller fish occur in shallower regions, although the size range is broad over the whole depth range. No apparent trend occurs in the size distribution with latitude over the range 17–54) N. Females outnumber males (1 male : 1·7 females) and both sexes are largely distinguishable from 300 mm L _T. Ripening eggs occur in females from both adult length modes, with running ripe and spent females of very different size indicating iteroparity.     

Group size structure affects patterns of aggression in larval salamanders

The potential importance of intrapopulation phenotypic variabilityto population-level ecology has been demonstrated in both theoreticaland field studies. One way to connect individuals to the dynamicsof populations they compose is to study behavioral response(an individual-level characteristic) to variability in conspecificphenotypes (a population-level characteristic). We examinedeffects of variation in size of individuals on patterns of aggressionin larval tiger salamanders (Ambystoma tigrinum nebulosum) byobserving aggressive behavior in groups of three larvae in alaboratory experment. We assessed effects of variability insize of conspecifics independently of mean larval size and larvaldensity Overall levels of aggression were generally higher ingroups in which all individuals were similprly sized than ingroups of variably sized individuals. Medium-sized individualsexhibited significantly higher levels of aggression and wereattacked significantly more often when in groups consistingonly of similarly sized larvae as compared to groups composedof larvae representing a wider range of body sizes. Activitylevels of larvae were also generally lower when all individualswere the same size, resulting in a negative correlation betweenactivity and levels of iggressititi. These results suggest thatgioups of similarly sized individuals experience a more aggressivesocial environment than groups of variably sized individuals,and they suggest a promising avenue of research for connectingindividual behavioral and physiological responses to size structure(phenotypic variability) with population dynamics.     

Society's Metabolism

In this article, we inquire into the intellectual history ofthe application of the biological concept of metabolism to social systems-not as a metaphor; but as a material and energetic process within the economy and society vis-A-vis various natural systems. The paper reviews several scientific traditions that may contribute to such a view, including biology and ecology, social theory, cultural anthropology, and social geography It assembles widely scattered approaches dating from the 1860s onward and shows how they prepare the ground for the pioneers of "industrial metabolism" in the late 1960s. In connection to varying political perspedives, metabolism gradually takes shape as a powerful interdisciplinary concept It will take another 25 years before this approach becomes one of the most important paradigms for the empirical analysis of the society-nature-interaction across various disciplines. This later period will be the subject of part II of this literature review     

Nutrient concentration in shape Sphagna at increased N-deposition rates and raised atmospheric CO2 concentrations

Sphagnum fuscum, S. magellanicum, S. angustifolium and S. warnstorfii were treated with N deposition rates (0, 10, 30 and 100 kg ha^-1 a^-1) and with four atmospheric CO₂ concentrations (350, 700, 1000 and 2000 ppm) in greenhouse for 71–120 days. Thereafter, concentrations of total N, P, K, Ca and Mg in the capitulae of the Sphagna were determined. The response of each species to N deposition was related to ecological differences. With increasing N deposition treatments, moss N concentrations increased and higher N:P-ratios were found, the increase being especially clear at the highest N load. Sphagnum fuscum, which occupies ombrotrophic habitats, was the most affected by the increased nitrogen load and as a consequence the other elements were decreased. Oligotrophic S. magellanicum, wide nutrient status tolerant S. angustifolium and meso-eutrophic S. warnstorfii tolerated better increased N deposition, though there were increased concentrations of Ca and Mg in S. warnstorfii and Mg in S. magellanicum. Nitrogen and P concentrations decreased with raised CO₂ concentrations, except for S. magellanicum. This seems to be the first time this kind of response in nutrient concentrations to enhanced CO₂ concentration has been shown to exist in bryophytes. The concentration of K clearly decreased in S. fuscum as did the concentration of Mg in the other Sphagna with increasing CO₂. Sphagnum angustifolium and S. magellanicum, which are the less specialized species, were the least affected by the CO₂ treatments.     

Potential replacement vegetation: an approach to vegetation mapping of cultural landscapes

Abstract. The concept of mapping potential replacement vegetation (PRV) is proposed as a parallel to potential natural vegetation (PNV). Potential replacement vegetation (PRV) is an abstract and hypothetical vegetation which is in balance with climatic and soil factors currently affecting a given habitat, with environmental factors influencing the habitat from outside such as air pollution, and with an abstract anthropogenic influence (management) of given type, frequency and intensity. For every habitat, there is a series of possible PRV-types corresponding to the different anthropogenic influences, e.g. grazing, mowing, trampling or growing cereals. The PRV-concept is especially useful in large-scale mapping (scales > 1 : 25 000) of small areas where replacement vegetation is the focus of attention for managers and land-use planners, for example in nature reserves where the aim is conservation of replacement vegetation managed in a traditional way, or in restoration ecology where the concept may be used for defining restoration goals and evaluating the success of restoration efforts. At smaller scales, PRV-mapping may be useful for revealing the biogeographical patterns of larger areas which may be different from the corresponding PNV patterns, because replacement vegetation and natural vegetation may respond to environmental gradients at different scales. An example of medium-scale PRV-mapping through the coincidence of diagnostic species of vegetation types, based on species distribution grid data, is presented. In cultural landscapes, the advantage of using the PRV-concept instead of PNV is its direct relationship to the replacement vegetation. In the habitat mapping with respect to the replacement vegetation, the PRV concept yields more valuable results than the mapping of actual vegetation, as the latter is strongly affected by spatially variable anthropogenic influences which may be largely independent from climatic and soil factors.     

On Hybrid Formation in the Rock Fern Asplenium x alternifolium (Aspleniaceae,Pteridophyta)

Length polymorphism in a non-coding spacer (trnL_UAA-trnF_GAA) in the chloroplast DNA was used in the investigation of the origin of the most common and conspicuous European fern hybrid, Asplenium x alternifolium (Aspleniaceae, Pteridophyta). The origins of A. x alternifolium, the hybrid between A. trichomanes s.l. and A. septentrionale s.l. was studied at three ploidy levels, diploid, triploid and tetraploid. The cpDNA technique allowed us to investigate the mode of hybrid formation between sexual species for the first time over a wide geographic range and with a large sample size. Morphological variation in this hybrid has previously been attributed to different reciprocal parental combinations, and to the influence of chloroplast genes on morphogenesis. Our results demonstrate that one parent, A. septentrionale s.l., acts predominantly as the female parent in these hybrids, with only one population of A. x alternifolium showing reciprocal hybridity. The discovery of predominantly unidirectional hybrid formation in this hybrid may be explained by the different breeding systems of the parental taxa. The role of gametophyte ecology is also assessed.